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Fitting protein-folding free energy landscape for a certain conformation to an NK fitness landscape
https://sucra.repo.nii.ac.jp/records/13344
https://sucra.repo.nii.ac.jp/records/13344182a9092-20e4-4785-8c1e-76f03dcabe6a
名前 / ファイル | ライセンス | アクション |
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A1002788.pdf (282.2 kB)
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Item type | 学術雑誌論文 / Journal Article(1) | |||||
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公開日 | 2008-10-21 | |||||
タイトル | ||||||
タイトル | Fitting protein-folding free energy landscape for a certain conformation to an NK fitness landscape | |||||
言語 | ||||||
言語 | eng | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | fitness landscape | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | sequence space | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | canonical ensemble | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | NK model | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | in vitro evolution | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | in silica evolution | |||||
キーワード | ||||||
主題Scheme | Other | |||||
主題 | thermostability | |||||
資源タイプ | ||||||
資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
資源タイプ | journal article | |||||
著者 |
相田, 拓洋
× 相田, 拓洋× 伏見, 譲 |
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著者 ローマ字 | ||||||
Aita, Takuyo | ||||||
著者 ローマ字 | ||||||
HUSIMI, Yuzuru | ||||||
著者 所属 | ||||||
産業技術総合研究所生命情報科学研究センター(現 : 埼玉大学大学院理工学研究科) | ||||||
著者 所属 | ||||||
埼玉大学工学部機能材料工学科 | ||||||
著者 所属(別言語) | ||||||
Rational Evolutionary Design of Advanced Biomolecules(REDS) Group/JST, Saitama Small Enterprise Promotion Corporation SKIP City(Present : Graduate School of Science and Engineering, Saitama University) | ||||||
著者 所属(別言語) | ||||||
Department of Functional Materials Science, Saitama University | ||||||
書誌情報 |
JOURNAL OF THEORETICAL BIOLOGY 巻 253, 号 1, p. 151-161, 発行日 2008 |
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年月次 | ||||||
2008-7 | ||||||
出版者名 | ||||||
出版者 | ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD | |||||
ISSN | ||||||
収録物識別子タイプ | ISSN | |||||
収録物識別子 | 00225193 | |||||
DOI | ||||||
関連タイプ | isVersionOf | |||||
識別子タイプ | DOI | |||||
関連識別子 | info:doi/10.1016/j.jtbi.2008.02.034 | |||||
関連サイト | ||||||
内容記述タイプ | Other | |||||
内容記述 | http://www.sciencedirect.com/science/journal/00225193 | http://www.sciencedirect.com/science/journal/00225193 | |||||
抄録 | ||||||
内容記述タイプ | Abstract | |||||
内容記述 | The NK fitness landscape is a mathematical landscape model with a parameter k that governs the degree of ruggedness of the landscape. We presented a procedure to fit a given landscape to the NK fitness landscape by introducing the "apparent k-value" k(app). In this paper, we defined the protein free energy (Delta G) landscape in amino acid sequence space, where Delta G is the folding free energy from a random coil to a "certain conformation". Applying this landscape to our fitting procedure, we examined the statistical properties of the landscape. For calculation of a conformation energy, amino acid residues are represented by points, and interaction energies among amino acid residues are given as (1 + K)-body interactions, that is, an unit of interacting (1 + K) residues cooperatively contribute a single energy value to the conformational energy. Our results suggest that the apparent k-value of the free energy landscape is k(app) approximate to K, and that the number of possible interactions among residues is unrelated to the k(app) value. This leads to the inference that k(app) takes values about 1-3 in real landscapes, if nature adopts two-body similar to four-body interaction energies. (c) 2008 Elsevier Ltd. All rights reserved. | |||||
版 | ||||||
[著者版] | ||||||
著者版フラグ | ||||||
出版タイプ | AM | |||||
出版タイプResource | http://purl.org/coar/version/c_ab4af688f83e57aa | |||||
資源タイプ | ||||||
内容記述タイプ | Other | |||||
内容記述 | text | |||||
フォーマット | ||||||
内容記述タイプ | Other | |||||
内容記述 | application/pdf | |||||
作成日 | ||||||
日付 | 2008-10-20 | |||||
日付タイプ | Created | |||||
アイテムID | ||||||
A1002788 |